|COMPARA||COMPARA database in ensembl.org
Ensembl Compara provides cross-species resources and analyses, at both the sequence level and the gene level.
|CPC||COMPARA Paralogy Class
It means that the source of paralogy class attributed to your query or searched gene comes from COMPARA database. COMPARA database is a part of ensembl.org
|MCPC||Modified COMPARA Paralogy Class
A by paralogyDB manually curated version of COMPARA data. We defined a series of curation on COMPARA data and called the new dataset MCPC. For example considering all-vs-all blastp of protein-coding genes of a species, if COMPARA suggest no paralogy relation between two genes but we see a blastp hit with PQC > 70 between those two genes, then we change this paralogy relation from pp to p which may lead to change of paralogy class for one or both of genes to HPG.
|PMPC||ParalogyDB Model Paralogy Class
Paralogy class attributed to a gene using machine learning model introduced by paralogyDB.
|PQC||Percent of query coverage
Percent of query sequence length that is similar to subject sequence. for example...